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Marine plastic pollution is a global issue, with microplastics (1 μm–5 mm) dominating the measured plastic count1,2. Although microplastics can be found throughout the oceanic water column3,4, most studies collect microplastics from surface waters (less than about 50-cm depth) using net tows5. Consequently, our understanding of the microplastics distribution across ocean depths is more limited. Here we synthesize depth-profile data from 1,885 stations collected between 2014 and 2024 to provide insights into the distribution and potential transport mechanisms of subsurface (below about 50-cm depth, which is not usually sampled by traditional practices3,6) microplastics throughout the oceanic water column. We find that the abundances of microplastics range from 10−4 to 104 particles per cubic metre. Microplastic size affects their distribution; the abundance of small microplastics (1 μm to 100 μm) decreases gradually with depth, indicating a more even distribution and longer lifespan in the water column compared with larger microplastics (100 μm to 5,000 μm) that tend to concentrate at the stratified layers. Mid-gyre accumulation zones extend into the subsurface ocean but are concentrated in the top 100 m and predominantly consist of larger microplastics. Our analysis suggests that microplastics constitute a measurable fraction of the total particulate organic carbon, increasing from 0.1% at 30 m to 5% at 2,000 m. Although our study establishes a global benchmark, our findings underscore that the lack of standardization creates substantial uncertainties, making it challenging to advance our comprehension of the distribution of microplastics and its impact on the oceanic environment. 

Abstract Community-based diversity analyses, such as metabarcoding, are increasingly popular in the field of metazoan zooplankton community ecology. However, some of the methodological uncertainties remain, such as the potential inflation of diversity estimates resulting from contamination by pseudogene sequences. Furthermore, primer affinity to specific taxonomic groups might skew community composition and structure during PCR. In this study, we estimated OTU (operational taxonomic unit) richness, Shannon’s H’, and the phylum-level community composition of samples from a coastal zooplankton community using four approaches: complement DNA (cDNA) and genomic DNA (gDNA) mitochondrial COI (Cytochrome oxidase subunit I) gene amplicon, metatranscriptome sequencing, and morphological identification. Results of mismatch distribution demonstrated that 90% is good threshold percentage to differentiate intra- and inter-species. Moderate level of correlations appeared upon comparing the species/OTU richness estimated from the different methods. Results strongly indicated that diversity inflation occurred in the samples amplified from gDNA because of mitochondrial pseudogene contamination (overall, gDNA produced two times more richness compared with cDNA amplicons). The unique community compositions observed in the PCR-based methods indicated that taxonomic amplification bias had occurred during the PCR. Therefore, it is recommended that PCR-free approaches be used whenever resolving community structure represents an essential aspect of the analysis.